N. Klijn, F. F. Nieuwenhof, J. D. Hoolwerf, C. B. Van-der-waals, and A. H. Weerkamp, Identification of Clostridium tyrobutyricum as the causative agent of late blowing in cheese by species-specific PCR amplification, Appl Environ Microbiol, vol.61, pp.2919-2924, 1995.

J. Brändle, K. J. Domig, and W. Kneifel, Relevance and analysis of butyric acid producing clostridia in milk and cheese, Food Control, vol.67, pp.96-113, 2016.

L. Jiang, L. Zhu, X. Xu, Y. Li, S. Li et al., Genome sequence of Clostridium tyrobutyricum ATCC 25755, a butyric acid-overproducing strain, Genome Announc, vol.1, pp.308-321, 2013.

D. Bassi, C. Fontana, S. Gazzola, E. Pietta, E. Puglisi et al., Draft genome sequence of Clostridium tyrobutyricum strain UC7086, isolated from Grana Padano cheese with late-blowing defect, Genome Announc, vol.1, pp.614-627, 2013.

M. Storari, D. Wüthrich, R. Bruggmann, H. Berthoud, and E. Arias-roth, Draft genome sequences of Clostridium tyrobutyricum strains FAM22552 and FAM22553, isolated from Swiss semihard red-smear cheese, Genome Announc, vol.3, pp.78-93, 2015.

C. Roux and J. L. Bergere, Taxonomic characters of "Clostridium tyrobutyricum, Ann Microbiol (Paris), vol.128, pp.267-276, 1977.

C. M. Bourgeois, L. Parc, O. Abgrall, B. Cleret, and J. , Membrane filtration of milk for counting spores of Clostridium tyrobutyricum, J Dairy Sci, vol.67, pp.81605-81612, 1984.

J. Bergère, H. Hayes, and J. Commissaire, Major protein components in the cell envelope of Clostridium tyrobutyricum, Ann Inst Pasteur Microbiol, vol.137, issue.86, p.80117, 1986.

J. Bergère, L. Vassal, M. Pitel, and M. Cathelin, Bactéries lactiques susceptibles d'inhiber la croissance de Clostridium tyrobutyricum en culture et dans le fromage, Lait, vol.58, pp.215-233, 1978.

A. G. Mathot, E. Beliard, and D. Thuault, Streptococcus thermophilus 580 produces a bacteriocin potentially suitable for inhibition of Clostridium tyrobutyricum in hard cheese, J Dairy Sci, vol.86, pp.3068-3074, 2003.

D. Thuault, E. Beliard, L. Guern, J. Bourgeois, and C. , Inhibition of Clostridium tyrobutyricum by bacteriocin-like substances produced by lactic acid bacteria, J Dairy Sci, vol.74, pp.78266-78266, 1991.

B. Abgrall, C. Bourgeois, and F. Bourva, Dénombrement des spores de Clostridium tyrobutyricum par filtration sur membrane et culture sur milieu gélosé, Lait, vol.65, pp.45-53, 1985.

L. Bourhis, A. Doré, J. Carlier, J. Chamba, J. Popoff et al., Contribution of C. beijerinckii and C. sporogenes in association with C. tyrobutyricum to the butyric fermentation, 2007.

, Int J Food Microbiol, vol.113, pp.154-163

J. Bergère, Mise en évidence de deux groupes sérologiques principaux chez Clostridium tyrobutyricum, Ann Inst Pasteur Microbiol, vol.136, pp.80008-80017, 1985.

J. Brown, M. Pirrung, and L. A. Mccue, FQC Dashboard: integrates FastQC results into a Web-based, interactive, and extensible FASTQ quality control tool, Bioinformatics, vol.33, pp.3137-3139, 2017.

R. Schmieder and R. Edwards, Quality control and preprocessing of metagenomic datasets, Bioinformatics, vol.27, pp.863-864, 2011.

A. Bankevich, S. Nurk, D. Antipov, A. A. Gurevich, M. Dvorkin et al., SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing, J Comput Biol, vol.19, pp.455-477, 2012.

B. Langmead and S. L. Salzberg, Fast gapped-read alignment with Bowtie 2, Nat Methods, vol.9, pp.357-359, 2012.

H. Li, B. Handsaker, A. Wysoker, T. Fennell, J. Ruan et al., The Sequence Alignment/Map format and SAMtools, Bioinformatics, vol.25, pp.2078-2079, 2009.

T. Seemann, Prokka: rapid prokaryotic genome annotation, Bioinformatics, vol.30, pp.2068-2069, 2014.

A. Bateman and D. H. Haft, HMM-based databases in InterPro, Brief Bioinform, vol.3, pp.236-245, 2002.

, UniProt: a worldwide hub of protein knowledge, The UniProt Consortium, vol.47, pp.506-515, 2019.

A. Prakash, M. Jeffryes, A. Bateman, and R. D. Finn, The HMMER Web server for protein sequence similarity search, Curr Protoc Bioinformatics, vol.60, 2017.

J. Huerta-cepas, K. Forslund, L. P. Coelho, D. Szklarczyk, L. J. Jensen et al., Fast genome-wide functional annotation through orthology assignment by eggNOG-Mapper, Mol Biol Evol, vol.34, pp.2115-2122, 2017.

D. A. Benson, M. Cavanaugh, K. Clark, I. Karsch-mizrachi, D. J. Lipman et al., GenBank. Nucleic Acids Res, vol.41, pp.36-42, 2012.