Photonic Crystal Surface Mode Real-Time Imaging of RAD51 DNA Repair Protein Interaction with the ssDNA Substrate

Galina Nifontova (1) , Cathy Charlier (2) , Nizar Ayadi (2) , Fabrice Fleury (2) , Alexander Karaulov (3) , Alyona Sukhanova (1) , Igor Nabiev (1)

1 LRN - Laboratoire de Recherche en Nanosciences - EA 4682
2 US2B - Unité en Sciences Biologiques et Biotechnologies de Nantes
3 Sechenov First Moscow State Medical University

Photonic crystals (PCs) are promising tools for label-free sensing in drug discovery screening, diagnostics, and analysis of ligand-receptor interactions. Imaging of PC surface modes has emerged as a novel approach to the detection of multiple binding events at the sensor surface. PC surface modification and decoration with recognition units yield an interface providing the highly sensitive detection of cancer biomarkers, antibodies, and oligonucleotides. The RAD51 protein plays a central role in DNA repair via the homologous recombination pathway. This recombinase is essential for the genome stability and its overexpression is often correlated with aggressive cancer. RAD51 is therefore a potential target in the therapeutic strategy for cancer. Here, we report the designing of a PC-based array sensor for real-time monitoring of oligonucleotide-RAD51 recruitment by means of surface mode imaging and validation of the concept of this approach. Our data demonstrate that the designed biosensor ensures the highly sensitive multiplexed analysis of association-dissociation events and detection of the biomarker of DNA damage using a microfluidic PC array. The obtained results highlight the potential of the developed technique for testing the functionality of candidate drugs, discovering new molecular targets and drug entities. This paves the way to further adaption and bioanalytical use of the biosensor for high-content screening to identify new DNA repair inhibitor drugs targeting the RAD51 nucleoprotein filament or to discover new molecular targets.

Mots clés: one-dimensional photonic crystal; surface mode imaging; microfluidic array; label-free detection; DNA repair protein; RAD51; association-dissociation kinetics

Domaines: Optique / photonique; Micro et nanotechnologies/Microélectronique

Galina Nifontova, Cathy Charlier, Nizar Ayadi, Fabrice Fleury, Alexander Karaulov, et al.. Photonic Crystal Surface Mode Real-Time Imaging of RAD51 DNA Repair Protein Interaction with the ssDNA Substrate. Biosensors, 2024, 14 (1), pp.43. ⟨10.3390/bios14010043⟩. ⟨hal-04449485⟩